Glyma09g31770 - SoyBase

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Report for Sequence Feature Glyma09g31770

Feature Type:	gene_model
Chromosome:	Gm09
Start:	38408573
stop:	38411335
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g31770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G62830	AT	Annotation by Michelle Graham. TAIR10: LSD1-like 1 \| chr1:23264638-23267172 REVERSE LENGTH=844	SoyBase	E_val: 0	ISS
GO:0016575	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone deacetylation	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:0051568	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K4 methylation	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008131	GO-mf	Annotation by Michelle Graham. GO Molecular Function: primary amine oxidase activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG0029	KOG	Amine oxidase	JGI		ISS
PTHR10742	Panther	AMINE OXIDASE	JGI		ISS
PTHR10742:SF30	Panther	AMINE OXIDASE	JGI		ISS
PF01593	PFAM	Flavin containing amine oxidoreductase	JGI		ISS
PF04433	PFAM	SWIRM domain	JGI		ISS
UniRef100_B9SUY7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Flavin-containing amine oxidase domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SUY7_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338FE7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338FE7 related cluster n=1 Tax=unknown RepID=UPI0002338FE7	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma09g31770

Locus	Gene Symbol	Protein Name
	LDL1-2	LSD1-like1 gene 2

Expression Patterns of Glyma09g31770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g31770

Paralog	Evidence	Comments
Glyma07g09990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g31770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g185800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g31770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g31770

Limit To All Plant Sequences

>Glyma09g31770.1   sequence type=CDS   gene model=Glyma09g31770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTTGTATATGTCATCATTCAAAAGAATCATATACGGGTCAGGCAGTCAAAGAAATTTAATACTTGTATCATCCAAAAACAAAATTATTGAAAGATCGGCATCCATGAGTGACAGCACCAACACAAACCCCCCACCACCTCCGGTGGCGGAGCCACCGCCACCACCGCAATCCGGTTCACCGGAAAACGACGTCGCAATGTCCCCCCAAAACTCCTCCGAGGACCCAGACTCCTCCCTCCCCACCCAAACAACACCCGAGCCCGCCGTTCCAGACTCCCCGGACTCCGCCACAACCCGACCCGACCCGAATCCTCCGCCTCGAAAACGCCGCCGCCGCAAGAAATTCTTCACGGAACTCACCACCGGGCCATCCACGCGCCGAAACGACGTCGCCAAGGACTGTGACGTGGAAGCCCTAATCGCGATCTCGGTAGGGTTTCCCGTGGATTCCTTAACCGAAGAAGAGATCGAAGCGAACGTGGTTTCCACCGTCGGAGGCTCCGAGCAATCCAACTACATCGTCGTCCGAAACCACATATTGGCGCGTTGGCGTTCCAACGTTTCGGTCTGGTTAACCCATGACCGGGCCCTCCGGTCGATCCGGTCCGAGCACAAGGGTTTGGTCGAAACCGCTTACCGGTTCCTGCTGGAGCACGGTTACATTAACTTCGGCCTCGCGCAGGAGATCCAAACCCTAAAGCTGAAACCTTTCGATGGGTCCGACCGAGGAACGGTGATTGTGATCGGTGCTGGGTTCGCGGGTTTGGTTGCGGCGAGACAATTGGTGTTCATGGGGTTTAAAGTTGTGATTTTGGAAGGTAGGACCCGACCCGGTGGGAGGGTTAAGACTAAGAAGATGAGTGGTGATGGGGTTGAGGCTGCAGCGGATTTCGGTGGAAGTGTCCTCACTGGAATAAACGGGAACCCTCTTGGGGTTCTTGCTAGACAATTGGGTTTGCCTTTGCATAAGGTTAGGGATATTTGTCCTCTCTATTTGCCTGATGGGAGGAGTGTTGACTCTGAGGTTGACTCTAGGGTTGAGGTTTCGTTTAACAAGCTGCTGGAGAGGGTTTGTAAGCTTAGGCAGGCGATGATCGAGGAGGTGAAGTCGGTGGACGTGCCCTTGGGGACGGCGTTGGAGGCTTTCCGAAGGGTTTATATGGTGGCTGAGGATAAGGAGGAGAGGATGTTGCTGAATTGGCACCTCGCGAATTTGGAGTATGCGAATGCGACGCTCATGTCAAATTTGTCAATGGCGTACTGGGATCAGGATGATCCCTATGAGATGGGTGGTGATCATTGCTTCATTCCTGGGGGGAATGAGAAATTTGTTCGCGCTTTGGCCGAGGATTTGCCAATTTTCTATGGGAGGACTGTGGAGTGTGTCAAGTATGGGAGTGACGGGGTGCTGGTTTATGCTGGTGGGCAGGAGTTTAGGGGGGGCATGGTGCTGTGTACTGTGCCGTTGGGGGTGCTAAAGAAGGGAGATATTGAGTTTGTGCCGGAGCTTCCTCAGAGGAAGAAGGATGCTATTCATAGGTTGGGGTTTGGGTTGTTGAACAAGGTTGCAATATTGTTTCCTTATAATTTCTGGGGTGGGGACATTGACACGTTTGGTCATTTGACCGAGGATTTGAGTATGAGAGGGGAGTTTTTTCTGTTCTATAGCTACTCCTCGGTGTCTGGGGGCCCGCTTCTGGTTGCGCTTGTTGCTGGGGAGGCTGCGATTAGGTTTGAAATGATGTCACCAGTGGAGTCTGTGAAGAGGGTGTTGGACATTCTGAAGAATATTTTTAATCCGAAGGGGATTGTTGTTCCGGATCCAGTTCAGGCCGCGTGTACTCGGTGGGGGAAGGATCACTTTGCGTATGGATCTTACTCTTATGTTGCAGTTGGATCTTCAGGAGACGATTATGATATTCTTGCAGAGAGTGTTGGAGATGGGACAGTGTTCTTTGCTGGAGAGGCGACTAGCAAGCAGTATCCTGCAACTATGCACGGGGCGTTTCTCAGTGGAATGAGAGAGGCCGCAAACATTTTGAGAGTGGCAAAGAGGAGGTCTTCAATGCCTATTGACACATCAAAAAGTGTCAACCAGGAGAATGATGATTTGAACAAATTGTTTGTGAAACCTGATCTGACATTTGGGAGCTTCTCTGCCTTGTTTGATCCAAATTTGAATGATCTTGATTCCAGTTCATTACTGAGGGTTAAAATTGGAGGAGCTGTGTTGGACTCTGGCAGTCTTTATCTCTATGCCTTGCTTCCAAAGAAGTGGGTCATTGAGTTGAGTCAGTTGGAGGGAGATGAGAACAGGATGAGAATGTTAAACCGCAATTTCGGGGTGAGTTTGGTTGGGAGGAAGGGTTTAAGTAGTGCTGCTGAATCTCTTATTGCCAGCATAAAACTGTCTAGACCCAACTTAAATGAAGCGGAAAATGGTCTTATTATGACTGGGAAGGAAAACTCGCAGTAG

Predicted protein sequences of Glyma09g31770

Limit To All Plant Sequences

>Glyma09g31770.1   sequence type=predicted peptide   gene model=Glyma09g31770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNLYMSSFKRIIYGSGSQRNLILVSSKNKIIERSASMSDSTNTNPPPPPVAEPPPPPQSGSPENDVAMSPQNSSEDPDSSLPTQTTPEPAVPDSPDSATTRPDPNPPPRKRRRRKKFFTELTTGPSTRRNDVAKDCDVEALIAISVGFPVDSLTEEEIEANVVSTVGGSEQSNYIVVRNHILARWRSNVSVWLTHDRALRSIRSEHKGLVETAYRFLLEHGYINFGLAQEIQTLKLKPFDGSDRGTVIVIGAGFAGLVAARQLVFMGFKVVILEGRTRPGGRVKTKKMSGDGVEAAADFGGSVLTGINGNPLGVLARQLGLPLHKVRDICPLYLPDGRSVDSEVDSRVEVSFNKLLERVCKLRQAMIEEVKSVDVPLGTALEAFRRVYMVAEDKEERMLLNWHLANLEYANATLMSNLSMAYWDQDDPYEMGGDHCFIPGGNEKFVRALAEDLPIFYGRTVECVKYGSDGVLVYAGGQEFRGGMVLCTVPLGVLKKGDIEFVPELPQRKKDAIHRLGFGLLNKVAILFPYNFWGGDIDTFGHLTEDLSMRGEFFLFYSYSSVSGGPLLVALVAGEAAIRFEMMSPVESVKRVLDILKNIFNPKGIVVPDPVQAACTRWGKDHFAYGSYSYVAVGSSGDDYDILAESVGDGTVFFAGEATSKQYPATMHGAFLSGMREAANILRVAKRRSSMPIDTSKSVNQENDDLNKLFVKPDLTFGSFSALFDPNLNDLDSSSLLRVKIGGAVLDSGSLYLYALLPKKWVIELSQLEGDENRMRMLNRNFGVSLVGRKGLSSAAESLIASIKLSRPNLNEAENGLIMTGKENSQ*

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